I'd say you're making assumptions about what has gone before that undermine the point of even carrying out an EICR. I dunno about you but the universe I occupy, energising the RCD and it staying put is all the verification some fitters will ever do...One of the boxes is necessary for verifying dead continuity readings. But you need to consider whether dead continuity testing is required in an already energised installation. Indeed Guidance Note 3 directly addresses this. You are there to assess the safety of the existing electrical installation, and not to perform a box-filling exercise. It's required for initial verification as the installation shouldn't be energised if it isn't all Earthed. That becomes a moot point once the installation has already been energised, and continuity can then legitimately be demonstrated by other means (i.e. live testing).
R1R2 testing can inform a fair bit more than checking earth continuity by whatever means is easiest.