Hello,
My assumption is that this domestic CU swap is in a normal domestic residence, not a HMO or hostel or hotel type building. If so then this is what i would do.
Fire Alarm, there is no requirement under the wiring regs to have one, so this is not a problem.
6 mm bonding is OK if, The meter tails are 16mm, and the main earth is 10mm. But only if the cutout fuse is 80a or lower. If it has a 100a fuse then your tails need to be 25mm, main earth 16mm and bonding 10mm, so you should upgrade it, the get out clause is that if it is not practical to upgrade, then it can be noted as a departure on the EIC and you can keep the 6mm, however upgrade is always option 1.
The shed wiring, you can only comment on what you can test and inspect, so if it tests OK but you are not happy with how it is installed or what type of cable is used then this should be noted in the comments box on the EIC. If it is unsafe to re energise then advise your customer accordingley, and quote to put it right.
As long as you do all you can and you leave the job safe, you will have no problems on your assessment.
If you are upgrading to the latest spec protection then you are improving on what they had, so it must be safer anyway.
Cheers..........Howard